- Tutorials and User's Guide
- Track and File Search
- Human: Experiment Matrix, Experiment List, Downloads and Cell Types
- Mouse: Experiment Matrix, Experiment List, Downloads and Cell Types
- ENCODE Antibodies and ENCODE Registered Experiment Variables
- File Formats and Data Standards and Software Tools
- Publications and Nature ENCODE Explorer and Galaxy Biomedical Tools
- ENCODE Project Portal (encodeproject.org)
- ENCODE Project at NHGRI (genome.gov)
- ENCODE Data at GEO
- ENCODE Data at Ensembl
- UCSC Genome Browser FAQ Page and
Searchable Google Groups Mailing List