Tutorials and Reference Card

• NHGRI ENCODE Tutorials
• ENCODE Quick Reference Card (free pdf courtesy of OpenHelix).
• OpenHelix Tutorial and Slides,"ENCODE Data at UCSC" (for purchase from OpenHelix).
• Ensembl/UCSC/WTSI ENCODE Workshop at HGM/IGC2013, "Working with ENCODE Data".

Publications

• ENCODE Project Consortium. A User's Guide to the Encyclopedia of DNA Elements (ENCODE). PLoS Biol. 2011 Apr;9(4):e1001046. Epub 2011 Apr 19.
• The ENCODE Data Coordination Center, UC Santa Cruz Genome Bioinformatics
  ENCODE Data in the UCSC Genome Browser: year 5 update. Nucleic Acids Res. 2013 Jan;41(Database issue):D56-63. Epub 2012 Nov 27.
  ENCODE whole-genome data in the UCSC Genome Browser: update 2012. Nucleic Acids Res. 2012 Jan;40(Database issue):D912-7. Epub 2011 Nov 9.
  ENCODE whole-genome data in the UCSC Genome Browser (2011 update). Nucleic Acids Res. 2011 Jan;39(Database issue):D871-5. Epub 2010 Oct 30.
  ENCODE whole-genome data in the UCSC Genome Browser. Nucleic Acids Res. 2010 Jan;38(Database issue):D620-5. Epub 2009 Nov 17.

Other

• ENCODE Genome-Wide Data on the UCSC Genome Browser. 'Tech talk' presentation at ISMB/ECCB Conference, July 2011.