Human Gene LY6G5B (uc031sty.1) Description and Page Index
  Description: Homo sapiens lymphocyte antigen 6 complex, locus G5B (LY6G5B), mRNA.
RefSeq Summary (NM_021221): LY6G5B belongs to a cluster of leukocyte antigen-6 (LY6) genes located in the major histocompatibility complex (MHC) class III region on chromosome 6. Members of the LY6 superfamily typically contain 70 to 80 amino acids, including 8 to 10 cysteines. Most LY6 proteins are attached to the cell surface by a glycosylphosphatidylinositol (GPI) anchor that is directly involved in signal transduction (Mallya et al., 2002 [PubMed 12079290]).[supplied by OMIM, Mar 2008]. ##Evidence-Data-START## Transcript exon combination :: AJ315545.1, AK289364.1 [ECO:0000332] RNAseq introns :: single sample supports all introns ERS025081, ERS025093 [ECO:0000348] ##Evidence-Data-END##
Transcript (Including UTRs)
   Position: chr6_mann_hap4:2,977,488-2,983,117 Size: 5,630 Total Exon Count: 3 Strand: +
Coding Region
   Position: chr6_mann_hap4:2,981,930-2,982,949 Size: 1,020 Coding Exon Count: 2 

Page IndexSequence and LinksUniProtKB CommentsGenetic AssociationsCTDMicroarray
RNA StructureProtein StructureOther SpeciesmRNA DescriptionsOther NamesModel Information
Methods
Data last updated: 2013-06-14

+  Sequence and Links to Tools and Databases
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+  Comments and Description Text from UniProtKB
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-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database: LY6G5B
CDC HuGE Published Literature: LY6G5B

+  Comparative Toxicogenomics Database (CTD)
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-  Microarray Expression Data
 
Expression ratio colors:

GNF Expression Atlas 2 Data from U133A and GNF1H Chips

      
      
      
     
    
     
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GNF Expression Atlas 1 Human Data on Affy U95 Chips

      
    
     
      
    
    
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+  mRNA Secondary Structure of 3' and 5' UTRs
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+  Protein Domain and Structure Information
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologNo orthologNo ortholog
 Gene Details    
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-  Descriptions from all associated GenBank mRNAs
  BC112019 - Homo sapiens casein kinase 2, beta polypeptide, mRNA (cDNA clone MGC:138224 IMAGE:8327487), complete cds.
BC112017 - Homo sapiens casein kinase 2, beta polypeptide, mRNA (cDNA clone MGC:138222 IMAGE:8327485), complete cds.
AK310551 - Homo sapiens cDNA, FLJ17593.
AK308742 - Homo sapiens cDNA, FLJ98783.
AK300671 - Homo sapiens cDNA FLJ50688 complete cds, highly similar to Casein kinase II subunit beta.
X16312 - Human mRNA for phosvitin/casein kinase II beta subunit.
X16937 - Human mRNA for phosvitin/casein kinase type II beta subunit (EC 2.7.1.37).
AK310954 - Homo sapiens cDNA, FLJ17996.
AK311860 - Homo sapiens cDNA, FLJ92126, Homo sapiens casein kinase 2, beta polypeptide (CSNK2B), mRNA.
M30448 - Human casein kinase II beta subunit mRNA, complete cds.
AB590710 - Synthetic construct DNA, clone: pFN21AE1709, Homo sapiens CSNK2B gene for casein kinase 2, beta polypeptide, without stop codon, in Flexi system.
CR541699 - Homo sapiens full open reading frame cDNA clone RZPDo834F0628D for gene CSNK2B, casein kinase 2, beta polypeptide; complete cds, without stopcodon.
AY113186 - Homo sapiens casein kinase II beta subunit mRNA, complete cds.
AK289364 - Homo sapiens cDNA FLJ76984 complete cds, highly similar to Homo sapiens lymphocyte antigen 6 complex, locus G5B (LY6G5B), mRNA.
AJ245417 - Homo sapiens partial mRNA for LY6G5b protein.
AB463846 - Synthetic construct DNA, clone: pF1KB7209, Homo sapiens LY6G5B gene for lymphocyte antigen 6 complex, locus G5B, without stop codon, in Flexi system.
BC140260 - Synthetic construct Homo sapiens clone IMAGE:100014274, MGC:173227 lymphocyte antigen 6 complex, locus G5B (LY6G5B) mRNA, encodes complete protein.
BC146529 - Synthetic construct Homo sapiens clone IMAGE:100014883, MGC:180152 lymphocyte antigen 6 complex, locus G5B (LY6G5B) mRNA, encodes complete protein.
AJ315545 - Homo sapiens mRNA for LY6G5B protein (LY6G5B gene).
HE864443 - Homo sapiens mRNA for casein kinase II b subunit splicing isoform 132 (CSNK2B gene).
HE864444 - Homo sapiens mRNA for casein kinase II b subunit splicing isoform 247 (CSNK2B gene).
HE864445 - Homo sapiens mRNA for casein kinase II b subunit splicing isoform 318 (CSNK2B gene).
HE864446 - Homo sapiens mRNA for casein kinase II b subunit splicing isoform 660 (CSNK2B gene).
HE864447 - Homo sapiens mRNA for casein kinase II b subunit splicing isoform 806 (CSNK2B gene).
HE864452 - Homo sapiens mRNA for chimera CSNK2B-LY6G5B splicing isoform 182 (CSNK2B-LY6G5B-182 gene).
HE864453 - Homo sapiens mRNA for chimera CSNK2B-LY6G5B splicing isoform 532 (CSNK2B-LY6G5B-532 gene).
HE864454 - Homo sapiens mRNA for chimera CSNK2B-LY6G5B splicing isoform 560 (CSNK2B-LY6G5B-560 gene).
HE864455 - Homo sapiens mRNA for chimera CSNK2B-LY6G5B splicing isoform 562 (CSNK2B-LY6G5B-562 gene).
HE864456 - Homo sapiens mRNA for chimera CSNK2B-LY6G5B splicing isoform 696 (CSNK2B-LY6G5B-696 gene).
HE864457 - Homo sapiens mRNA for chimera CSNK2B-LY6G5B splicing isoform 991 (CSNK2B-LY6G5B--991 gene).
HE864459 - Homo sapiens mRNA for chimera CSNK2B-LY6G5B splicing isoform 1103 (CSNK2B-LY6G5B-1103 gene).
HE864460 - Homo sapiens mRNA for chimera CSNK2B-LY6G5B splicing isoform 1181 (CSNK2B-LY6G5B-1181 gene).
HE864461 - Homo sapiens mRNA for chimera CSNK2B-LY6G5B splicing isoform 1327 (CSNK2B-LY6G5B-1327 gene).
HE864458 - Homo sapiens mRNA for chimera CSNK2B-LY6G5B splicing isoform 1072 (CSNK2B-LY6G5B-1072 gene).
HE864448 - Homo sapiens partial mRNA for lymphocyte antigen-6 G5B splicing isoform 288 (LY6G5B gene).
HE864449 - Homo sapiens partial mRNA for lymphocyte antigen-6 G5B splicing isoform 452 (LY6G5B gene).
HE864450 - Homo sapiens partial mRNA for lymphocyte antigen-6 G5B splicing isoform 690 (LY6G5B gene).
HE864451 - Homo sapiens partial mRNA for lymphocyte antigen-6 G5B splicing isoform 837 (LY6G5B gene).

+  Other Names for This Gene
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-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: HE864456.1
exon count: 3CDS single in 3' UTR: no RNA size: 696
ORF size: 441CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 885.00frame shift in genome: no % Coverage: 99.86
has start codon: yes stop codon in genome: no # of Alignments: 7
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
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-  Methods, Credits, and Use Restrictions
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