Human Gene C6orf10 (uc021zqa.1) Description and Page Index
  Description: Homo sapiens chromosome 6 open reading frame 10 (C6orf10), mRNA.
Transcript (Including UTRs)
   Position: chr6_mann_hap4:3,603,328-3,666,293 Size: 62,966 Total Exon Count: 17 Strand: -
Coding Region
   Position: chr6_mann_hap4:3,603,594-3,660,448 Size: 56,855 Coding Exon Count: 15 

Page IndexSequence and LinksUniProtKB CommentsGenetic AssociationsCTDMicroarray
RNA StructureProtein StructureOther SpeciesmRNA DescriptionsOther NamesModel Information
Methods
Data last updated: 2013-06-14

+  Sequence and Links to Tools and Databases
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+  Comments and Description Text from UniProtKB
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-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database: C6orf10
CDC HuGE Published Literature: C6orf10
Positive Disease Associations: Arthritis, Juvenile Rheumatoid , Arthritis, Rheumatoid , Asthma , Diabetes Mellitus, Type 1 , Diabetic Nephropathies , Drug-Induced Liver Injury , Graves Disease , Lupus Erythematosus, Systemic , Multiple Sclerosis , Psoriasis
Related Studies:
  1. Arthritis, Juvenile Rheumatoid
    Edward M Behrens et al. Arthritis and rheumatism 2008, Association of the TRAF1-C5 locus on chromosome 9 with juvenile idiopathic arthritis., Arthritis and rheumatism. [PubMed 18576341]
  2. Arthritis, Rheumatoid
    Eli A Stahl et al. Nature genetics 2010, Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci., Nature genetics. [PubMed 20453842]
  3. Asthma
    Tomomitsu Hirota et al. Nature genetics 2011, Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population., Nature genetics. [PubMed 21804548]
           more ... click here to view the complete list

+  Comparative Toxicogenomics Database (CTD)
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-  Microarray Expression Data
 
Expression ratio colors:

GNF Expression Atlas 2 Data from U133A and GNF1H Chips

      
      
      
     
    
     
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GNF Expression Atlas 1 Human Data on Affy U95 Chips

      
    
     
      
    
    
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+  mRNA Secondary Structure of 3' and 5' UTRs
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+  Protein Domain and Structure Information
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologNo orthologNo ortholog
 Gene Details    
 Gene Sorter    
 RGD    
      
      

-  Descriptions from all associated GenBank mRNAs
  AK310230 - Homo sapiens cDNA, FLJ17272.
U60665 - Human testis specific basic protein (TSBP), complete cds.
BC034774 - Homo sapiens chromosome 6 open reading frame 10, mRNA (cDNA clone MGC:34216 IMAGE:5169157), complete cds.
AK302176 - Homo sapiens cDNA FLJ57662 complete cds.
AK225742 - Homo sapiens mRNA for Splice isoform 2 of Q5SRN2 variant, clone: TST08922.

+  Other Names for This Gene
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-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: BC034774.1
exon count: 17CDS single in 3' UTR: no RNA size: 2222
ORF size: 1428CDS single in intron: no Alignment % ID: 99.72
txCdsPredict score: 3035.00frame shift in genome: no % Coverage: 78.35
has start codon: yes stop codon in genome: no # of Alignments: 8
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 572# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.