Human Gene GPANK1 (uc021zpk.1) Description and Page Index
Description: Homo sapiens G patch domain and ankyrin repeats 1 (GPANK1), transcript variant 5, mRNA. RefSeq Summary (NM_001199240): This gene is located in a cluster of HLA-B-associated transcripts, which is included in the human major histocompatability complex III region. This gene encodes a protein which is thought to play a role in immunity. Multiple alternatively spliced variants, encoding the same protein, have been identified. [provided by RefSeq, Nov 2010]. Transcript (Including UTRs) Position: chr6_mann_hap4:2,971,896-2,976,297 Size: 4,402 Total Exon Count: 4 Strand: - Coding Region Position: chr6_mann_hap4:2,972,933-2,975,145 Size: 2,213 Coding Exon Count: 2
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
ModBase Predicted Comparative 3D Structure on O95872
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.