Human Gene GPANK1 (uc021zpk.1) Description and Page Index
  Description: Homo sapiens G patch domain and ankyrin repeats 1 (GPANK1), transcript variant 5, mRNA.
RefSeq Summary (NM_001199240): This gene is located in a cluster of HLA-B-associated transcripts, which is included in the human major histocompatability complex III region. This gene encodes a protein which is thought to play a role in immunity. Multiple alternatively spliced variants, encoding the same protein, have been identified. [provided by RefSeq, Nov 2010].
Transcript (Including UTRs)
   Position: chr6_mann_hap4:2,971,896-2,976,297 Size: 4,402 Total Exon Count: 4 Strand: -
Coding Region
   Position: chr6_mann_hap4:2,972,933-2,975,145 Size: 2,213 Coding Exon Count: 2 

Page IndexSequence and LinksUniProtKB CommentsCTDRNA StructureProtein Structure
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

+  Sequence and Links to Tools and Databases
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+  Comments and Description Text from UniProtKB
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-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -115.75337-0.343 Picture PostScript Text
3' UTR -338.161037-0.326 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

+  Protein Domain and Structure Information
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+  Orthologous Genes in Other Species
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-  Descriptions from all associated GenBank mRNAs
  AK123707 - Homo sapiens cDNA FLJ41713 fis, clone HLUNG2011833, highly similar to Homo sapiens MSH55 gene.
AJ420471 - Homo sapiens mRNA full length insert cDNA clone EUROIMAGE 1089917.
BC008783 - Homo sapiens HLA-B associated transcript 4, mRNA (cDNA clone MGC:3737 IMAGE:3629572), complete cds.
BC018875 - Homo sapiens HLA-B associated transcript 4, mRNA (cDNA clone IMAGE:3629069).
AK314056 - Homo sapiens cDNA, FLJ94721, highly similar to Homo sapiens HLA-B associated transcript 4 (BAT4), mRNA.
DQ892676 - Synthetic construct clone IMAGE:100005306; FLH188762.01X; RZPDo839F1073D HLA-B associated transcript 4 (BAT4) gene, encodes complete protein.
DQ895918 - Synthetic construct Homo sapiens clone IMAGE:100010378; FLH188758.01L; RZPDo839F1063D HLA-B associated transcript 4 (BAT4) gene, encodes complete protein.
AB529099 - Synthetic construct DNA, clone: pF1KB4392, Homo sapiens BAT4 gene for HLA-B associated transcript 4, without stop codon, in Flexi system.
AF087962 - Homo sapiens full length insert cDNA clone YU40C12.

+  Other Names for This Gene
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+  Gene Model Information
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+  Methods, Credits, and Use Restrictions
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