Human Gene HLA-DPB2 (uc011hgh.1) Description and Page Index
  Description: Homo sapiens major histocompatibility complex, class II, DP beta 2 (pseudogene) (HLA-DPB2), non-coding RNA.
Transcript (Including UTRs)
   Position: chr6_mann_hap4:4,537,841-4,554,153 Size: 16,313 Total Exon Count: 5 Strand: +


Page IndexSequence and LinksGenetic AssociationsCTDOther SpeciesmRNA Descriptions
Other NamesModel InformationMethods
Data last updated: 2013-06-14

+  Sequence and Links to Tools and Databases
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-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database: HLA-DPB2
CDC HuGE Published Literature: HLA-DPB2
Positive Disease Associations: Creatinine , Electrocardiography , Glomerulonephritis, IGA , Tunica Media
Related Studies:
  1. Creatinine
    , , . [PubMed 0]
  2. Electrocardiography
    Fabio Marroni et al. Circulation. Cardiovascular genetics 2009, A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project., Circulation. Cardiovascular genetics. [PubMed 20031603]
    Our results suggested an association between the RR interval and GPR133 and confirmed an association between the QT interval and NOS1AP.
  3. Glomerulonephritis, IGA
    Ali G Gharavi et al. Nature genetics 2011, Genome-wide association study identifies susceptibility loci for IgA nephropathy., Nature genetics. [PubMed 21399633]
           more ... click here to view the complete list

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC017967 - Homo sapiens major histocompatibility complex, class II, DP beta 2 (pseudogene), mRNA (cDNA clone IMAGE:4663904).
AK301188 - Homo sapiens cDNA FLJ60911 complete cds, moderately similar to HLA class II histocompatibility antigen, DP(W4) beta chain precursor.
DQ585414 - Homo sapiens piRNA piR-52526, complete sequence.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_001435
UCSC ID: uc011hgh.1
RefSeq Accession: NR_001435

-  Gene Model Information
 
category: nearCoding nonsense-mediated-decay: no RNA accession: NR_001435.1
exon count: 5CDS single in 3' UTR: no RNA size: 805
ORF size: 0CDS single in intron: no Alignment % ID: 98.01
txCdsPredict score: 404.50frame shift in genome: no % Coverage: 100.00
has start codon: no stop codon in genome: no # of Alignments: 7
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.