Human Gene PRRT1 (uc011hcc.1) Description and Page Index
  Description: Homo sapiens proline-rich transmembrane protein 1 (PRRT1), mRNA.
Transcript (Including UTRs)
   Position: chr6_mann_hap4:3,458,984-3,463,704 Size: 4,721 Total Exon Count: 6 Strand: -
Coding Region
   Position: chr6_mann_hap4:3,459,334-3,462,448 Size: 3,115 Coding Exon Count: 4 

Page IndexSequence and LinksGenetic AssociationsCTDRNA StructureOther Species
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

+  Sequence and Links to Tools and Databases
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-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database: PRRT1
CDC HuGE Published Literature: PRRT1

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -105.50265-0.398 Picture PostScript Text
3' UTR -92.46350-0.264 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AF085841 - Homo sapiens full length insert cDNA clone YI44H12.
AK123424 - Homo sapiens cDNA FLJ41430 fis, clone BRHIP2005752, highly similar to Homo sapiens NG5.
BC013201 - Homo sapiens proline-rich transmembrane protein 1, mRNA (cDNA clone MGC:18030 IMAGE:3924575), complete cds.
BC063046 - Homo sapiens proline-rich transmembrane protein 1, mRNA (cDNA clone MGC:65172 IMAGE:5197474), complete cds.
AK054885 - Homo sapiens cDNA FLJ30323 fis, clone BRACE2007109, highly similar to Extensin-like protein NG5.
AL050203 - Homo sapiens mRNA; cDNA DKFZp586F1123 (from clone DKFZp586F1123).

-  Other Names for This Gene
  Alternate Gene Symbols: BC013201
UCSC ID: uc011hcc.1
RefSeq Accession: NM_030651

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: BC013201.1
exon count: 6CDS single in 3' UTR: no RNA size: 1745
ORF size: 1107CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 2260.00frame shift in genome: no % Coverage: 98.68
has start codon: yes stop codon in genome: no # of Alignments: 8
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.