Human Gene LY6G6E (uc011han.1) Description and Page Index
  Description: Homo sapiens lymphocyte antigen 6 complex, locus G6E (pseudogene) (LY6G6E), transcript variant 1, non-coding RNA.
RefSeq Summary (NR_024541): LY6G6E belongs to a cluster of leukocyte antigen-6 (LY6) genes located in the major histocompatibility complex (MHC) class III region on chromosome 6. Members of the LY6 superfamily typically contain 70 to 80 amino acids, including 8 to 10 cysteines. Most LY6 proteins are attached to the cell surface by a glycosylphosphatidylinositol (GPI) anchor that is directly involved in signal transduction (Mallya et al., 2002 [PubMed 12079290]).[supplied by OMIM, Mar 2008].
Transcript (Including UTRs)
   Position: chr6_mann_hap4:3,022,646-3,024,735 Size: 2,090 Total Exon Count: 3 Strand: -

Page IndexSequence and LinksGenetic AssociationsCTDMicroarrayOther Species
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

+  Sequence and Links to Tools and Databases
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-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database: LY6G6E
CDC HuGE Published Literature: LY6G6E

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  Microarray Expression Data
Expression ratio colors:

GNF Expression Atlas 2 Data from U133A and GNF1H Chips


-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog

-  Descriptions from all associated GenBank mRNAs
  AK297235 - Homo sapiens cDNA FLJ50806 complete cds, highly similar to HLA-B-associated transcript 5.
AJ245419 - Homo sapiens mRNA for G6e protein (G6e gene located in the class III region of the major histocompatibility complex).
BC069141 - Homo sapiens lymphocyte antigen 6 complex, locus G6E, mRNA (cDNA clone IMAGE:7217000).
AJ315538 - Homo sapiens mRNA for truncated LY6G6E protein, splice variant 1.
AJ315539 - Homo sapiens mRNA for truncated LY6G6E protein, splice variant 2.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_024541
UCSC ID: uc011han.1
RefSeq Accession: NR_024541

-  Gene Model Information
category: nearCoding nonsense-mediated-decay: no RNA accession: NR_024541.1
exon count: 3CDS single in 3' UTR: no RNA size: 571
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 502.00frame shift in genome: no % Coverage: 100.00
has start codon: no stop codon in genome: no # of Alignments: 7
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 41# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.