Human Gene CCHCR1 (uc011gwf.2) Description and Page Index
  Description: Homo sapiens coiled-coil alpha-helical rod protein 1 (CCHCR1), transcript variant 3, mRNA.
Transcript (Including UTRs)
   Position: chr6_mann_hap4:2,458,574-2,474,393 Size: 15,820 Total Exon Count: 18 Strand: -
Coding Region
   Position: chr6_mann_hap4:2,458,727-2,473,189 Size: 14,463 Coding Exon Count: 17 

Page IndexSequence and LinksUniProtKB CommentsGenetic AssociationsCTDMicroarray
RNA StructureProtein StructureOther SpeciesmRNA DescriptionsOther NamesModel Information
Methods
Data last updated: 2013-06-14

+  Sequence and Links to Tools and Databases
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+  Comments and Description Text from UniProtKB
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-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database: CCHCR1
CDC HuGE Published Literature: CCHCR1
Positive Disease Associations: Behcet Syndrome , Colitis, Ulcerative , Nevirapine , Prostatic Neoplasms , Psoriasis
Related Studies:
  1. Behcet Syndrome
    Elaine F Remmers et al. Nature genetics 2010, , Nature genetics. [PubMed 20622878]
  2. Behcet Syndrome
    Elaine F Remmers et al. Nature genetics 2010, , Nature genetics. [PubMed 20622878]
  3. Behcet Syndrome
    Elaine F Remmers et al. Nature genetics 2010, , Nature genetics. [PubMed 20622878]
           more ... click here to view the complete list

+  Comparative Toxicogenomics Database (CTD)
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-  Microarray Expression Data
 
Expression ratio colors:

GNF Expression Atlas 2 Data from U133A and GNF1H Chips

      
      
      
     
    
     
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GNF Expression Atlas 1 Human Data on Affy U95 Chips

      
    
     
      
    
    
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+  mRNA Secondary Structure of 3' and 5' UTRs
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+  Protein Domain and Structure Information
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
Jackson Lab     
Protein Sequence     
Alignment     

-  Descriptions from all associated GenBank mRNAs
  AK000533 - Homo sapiens cDNA FLJ20526 fis, clone KAT10627.
AB029331 - Homo sapiens HCR (a-helix coiled-coil rod homologue) mRNA, complete cds.
AB112475 - Homo sapiens SBP 1b mRNA for StAR protein binding protein 1b, complete cds.
AB112474 - Homo sapiens SBP mRNA for StAR protein binding protein, complete cds.
AK000204 - Homo sapiens cDNA FLJ20197 fis, clone COLF0996.
AF216493 - Homo sapiens a-helical protein (HCR) mRNA, complete cds.
AK289446 - Homo sapiens cDNA FLJ78692 complete cds.
AK000217 - Homo sapiens cDNA FLJ20210 fis, clone COLF1787.
AK295494 - Homo sapiens cDNA FLJ54473 complete cds, highly similar to Coiled-coil alpha-helical rod protein 1.
BC110534 - Homo sapiens coiled-coil alpha-helical rod protein 1, mRNA (cDNA clone MGC:126371 IMAGE:40035162), complete cds.
BC110535 - Homo sapiens coiled-coil alpha-helical rod protein 1, mRNA (cDNA clone MGC:126372 IMAGE:40035164), complete cds.
AY029160 - Homo sapiens alpha helical coiled-coil rod protein (HCR) mRNA, psoriasis-associated allele, complete cds.
CR457227 - Homo sapiens full open reading frame cDNA clone RZPDo834B046D for gene C6orf18, chromosome 6 open reading frame 18; complete cds, incl. stopcodon.
AK310626 - Homo sapiens cDNA, FLJ17668.

+  Other Names for This Gene
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-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_019052.3
exon count: 18CDS single in 3' UTR: no RNA size: 2641
ORF size: 2349CDS single in intron: no Alignment % ID: 99.73
txCdsPredict score: 4174.00frame shift in genome: no % Coverage: 99.39
has start codon: yes stop codon in genome: no # of Alignments: 6
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
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