Human Gene C6orf136 (uc011gts.2) Description and Page Index
  Description: Homo sapiens chromosome 6 open reading frame 136 (C6orf136), transcript variant 1, mRNA.
Transcript (Including UTRs)
   Position: chr6_mann_hap4:1,962,888-1,969,054 Size: 6,167 Total Exon Count: 6 Strand: +
Coding Region
   Position: chr6_mann_hap4:1,963,081-1,968,759 Size: 5,679 Coding Exon Count: 6 

Page IndexSequence and LinksUniProtKB CommentsCTDMicroarrayRNA Structure
Protein StructureOther SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

+  Sequence and Links to Tools and Databases
  Press "+" in the title bar above to open this section.

-  Comments and Description Text from UniProtKB
  ID: CF136_HUMAN
DESCRIPTION: RecName: Full=Uncharacterized protein C6orf136;
SEQUENCE CAUTION: Sequence=CAI17760.2; Type=Erroneous gene model prediction; Sequence=CAI41881.2; Type=Erroneous gene model prediction; Sequence=CAI95540.2; Type=Erroneous gene model prediction; Sequence=CAI95541.2; Type=Erroneous gene model prediction;

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  Microarray Expression Data
 
Expression ratio colors:

GNF Expression Atlas 2 Data from U133A and GNF1H Chips

      
      
      
     
    
     
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -67.00193-0.347 Picture PostScript Text
3' UTR -70.14295-0.238 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR018790 - DUF2358

ModBase Predicted Comparative 3D Structure on Q5SQH8
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
Jackson LabRGD    
Protein Sequence     
Alignment     

-  Descriptions from all associated GenBank mRNAs
  BC073975 - Homo sapiens chromosome 6 open reading frame 136, mRNA (cDNA clone IMAGE:5764635), partial cds.
AK127564 - Homo sapiens cDNA FLJ45657 fis, clone CTONG2014959.
BC064397 - Homo sapiens chromosome 6 open reading frame 136, mRNA (cDNA clone IMAGE:5762716), partial cds.
BC016167 - Homo sapiens chromosome 6 open reading frame 136, mRNA (cDNA clone MGC:15854 IMAGE:3509511), complete cds.
CU677581 - Synthetic construct Homo sapiens gateway clone IMAGE:100021854 5' read C6orf136 mRNA.
HQ447672 - Synthetic construct Homo sapiens clone IMAGE:100071113; CCSB012468_01 chromosome 6 open reading frame 136 (C6orf136) gene, encodes complete protein.

-  Other Names for This Gene
  Alternate Gene Symbols: A9R9P9, CF136_HUMAN, NM_001109938, NP_001103408, Q5SQH8, Q5SU01, Q6ZSB7, Q8TB84
UCSC ID: uc011gts.2
RefSeq Accession: NM_001109938
Protein: Q5SQH8 (aka CF136_HUMAN