Human Gene HCG18 (uc011gsh.2) Description and Page Index
  Description: Homo sapiens HLA complex group 18 (non-protein coding) (HCG18), transcript variant 1, non-coding RNA.
Transcript (Including UTRs)
   Position: chr6_mann_hap4:1,603,265-1,643,001 Size: 39,737 Total Exon Count: 5 Strand: -

Page IndexSequence and LinksGenetic AssociationsCTDOther SpeciesmRNA Descriptions
Other NamesModel InformationMethods
Data last updated: 2013-06-14

+  Sequence and Links to Tools and Databases
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-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database: HCG18
CDC HuGE Published Literature: HCG18
Positive Disease Associations: Behcet Syndrome , Body Height , Lupus Erythematosus, Systemic , Multiple Sclerosis
Related Studies:
  1. Behcet Syndrome
    Elaine F Remmers et al. Nature genetics 2010, , Nature genetics. [PubMed 20622878]
  2. Body Height
    , , . [PubMed 0]
  3. Body Height
    , , . [PubMed 0]
           more ... click here to view the complete list

+  Comparative Toxicogenomics Database (CTD)
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog

-  Descriptions from all associated GenBank mRNAs
  AK023334 - Homo sapiens cDNA FLJ13272 fis, clone OVARC1001004.
BC040058 - Homo sapiens, clone IMAGE:6152133, mRNA.
AK098416 - Homo sapiens cDNA FLJ25550 fis, clone JTH01686.
AK056160 - Homo sapiens cDNA FLJ31598 fis, clone NT2RI2002549.
AK055657 - Homo sapiens cDNA FLJ31095 fis, clone IMR321000193.
BC035165 - Homo sapiens cDNA clone IMAGE:5265581.
DQ582292 - Homo sapiens piRNA piR-32404, complete sequence.
DQ595181 - Homo sapiens piRNA piR-61293, complete sequence.

+  Other Names for This Gene
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-  Gene Model Information
category: antisense nonsense-mediated-decay: no RNA accession: NR_024052.2
exon count: 5CDS single in 3' UTR: no RNA size: 6820
ORF size: 0CDS single in intron: no Alignment % ID: 99.93
txCdsPredict score: 280.00frame shift in genome: no % Coverage: 99.91
has start codon: no stop codon in genome: no # of Alignments: 7
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.