Human Gene HLA-J (uc011grf.2) Description and Page Index
  Description: Homo sapiens major histocompatibility complex, class I, J (pseudogene) (HLA-J), non-coding RNA.
RefSeq Summary (NR_024240): This major histocompatibility complex gene represents a transcribed pseudogene, possibly derived from HLA-A. [provided by RefSeq, May 2010].
Transcript (Including UTRs)
   Position: chr6_mann_hap4:1,272,791-1,276,307 Size: 3,517 Total Exon Count: 5 Strand: +
Coding Region
   Position: chr6_mann_hap4:1,274,672-1,275,987 Size: 1,316 Coding Exon Count: 4 

Page IndexSequence and LinksGenetic AssociationsCTDMicroarrayRNA Structure
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

+  Sequence and Links to Tools and Databases
  Press "+" in the title bar above to open this section.

-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database: HLA-J
CDC HuGE Published Literature: HLA-J

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  Microarray Expression Data
Expression ratio colors:

GNF Expression Atlas 2 Data from U133A and GNF1H Chips


GNF Expression Atlas 1 Human Data on Affy U95 Chips


-  mRNA Secondary Structure of 3' and 5' UTRs
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -138.30362-0.382 Picture PostScript Text
3' UTR -81.20320-0.254 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologNo orthologNo ortholog
 Gene Details    
 Gene Sorter    

-  Descriptions from all associated GenBank mRNAs
  M27971 - Human MHC class I HLA-ABC mRNA, 3' end.
U88244 - Homo sapiens MHC-G (HLA) mRNA, HLA-G*01012 allele, partial cds.
M27539 - Human MHC class I HLA-A cell surface antigen mRNA, (HLA-A28,-B40, -Cw3), clone LB45.
BC089454 - Homo sapiens major histocompatibility complex, class I, J (pseudogene), mRNA (cDNA clone IMAGE:30563285).
BC020891 - Homo sapiens major histocompatibility complex, class I, J (pseudogene), mRNA (cDNA clone IMAGE:4694038).
BC062324 - Homo sapiens major histocompatibility complex, class I, J (pseudogene), mRNA (cDNA clone IMAGE:5420082).

-  Other Names for This Gene
  Alternate Gene Symbols: BC062324
UCSC ID: uc011grf.2
RefSeq Accession: NR_024240

-  Gene Model Information
category: coding nonsense-mediated-decay: no RNA accession: BC062324.1
exon count: 5CDS single in 3' UTR: no RNA size: 876
ORF size: 432CDS single in intron: no Alignment % ID: 99.53
txCdsPredict score: 859.00frame shift in genome: no % Coverage: 97.95
has start codon: yes stop codon in genome: no # of Alignments: 8
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.