Human Gene HLA-H (uc011gqp.2) Description and Page Index
  Description: Homo sapiens major histocompatibility complex, class I, H (pseudogene) (HLA-H), non-coding RNA.
RefSeq Summary (NR_001434): This major histocompatibility complex gene represents a transcribed pseudogene, possibly derived from HLA-A. This gene displays extensive variation. [provided by RefSeq, May 2010]. Sequence Note: The RefSeq transcript was derived from the reference genome assembly. The genomic coordinates were determined from alignments. ##Evidence-Data-START## RNAseq introns :: mixed/partial sample support ERS025093 [ECO:0000350] ##Evidence-Data-END##
Transcript (Including UTRs)
   Position: chr6_mann_hap4:1,149,678-1,153,133 Size: 3,456 Total Exon Count: 7 Strand: +


Page IndexSequence and LinksGenetic AssociationsCTDOther SpeciesmRNA Descriptions
Other NamesModel InformationMethods
Data last updated: 2013-06-14

+  Sequence and Links to Tools and Databases
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-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database: HLA-H
CDC HuGE Published Literature: HLA-H

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  M27971 - Human MHC class I HLA-ABC mRNA, 3' end.
AK299998 - Homo sapiens cDNA FLJ52667 complete cds, highly similar to HLA class I histocompatibility antigen, alpha chain H precursor.
AK090500 - Homo sapiens cDNA FLJ33181 fis, clone ADRGL2003684, highly similar to HLA class I histocompatibility antigen, alpha chain H precursor.
AX746483 - Sequence 8 from Patent EP1308459.
AK308374 - Homo sapiens cDNA, FLJ98322.
AK309480 - Homo sapiens cDNA, FLJ99521.
AK293556 - Homo sapiens cDNA FLJ53543 complete cds, moderately similar to HLA class I histocompatibility antigen, alpha chain H precursor.
AK309163 - Homo sapiens cDNA, FLJ99204.
AK300878 - Homo sapiens cDNA FLJ53565 complete cds, moderately similar to HLA class I histocompatibility antigen, alpha chain H precursor.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_001434
UCSC ID: uc011gqp.2
RefSeq Accession: NR_001434

-  Gene Model Information
 
category: nearCoding nonsense-mediated-decay: yes RNA accession: NR_001434.2
exon count: 7CDS single in 3' UTR: no RNA size: 1839
ORF size: 0CDS single in intron: no Alignment % ID: 98.51
txCdsPredict score: 1024.50frame shift in genome: no % Coverage: 98.59
has start codon: yes stop codon in genome: no # of Alignments: 8
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 1
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.