Human Gene HLA-H (uc011gqo.2) Description and Page Index
  Description: Homo sapiens major histocompatibility complex, class I, H (pseudogene) (HLA-H), non-coding RNA.
RefSeq Summary (NR_001434): This major histocompatibility complex gene represents a transcribed pseudogene, possibly derived from HLA-A. This gene displays extensive variation. [provided by RefSeq, May 2010]. Sequence Note: The RefSeq transcript was derived from the reference genome assembly. The genomic coordinates were determined from alignments. ##Evidence-Data-START## RNAseq introns :: mixed/partial sample support ERS025093 [ECO:0000350] ##Evidence-Data-END##
Transcript (Including UTRs)
   Position: chr6_mann_hap4:1,149,678-1,151,662 Size: 1,985 Total Exon Count: 3 Strand: +
Coding Region
   Position: chr6_mann_hap4:1,149,824-1,151,038 Size: 1,215 Coding Exon Count: 3 

Page IndexSequence and LinksUniProtKB CommentsGenetic AssociationsCTDRNA Structure
Protein StructureOther SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

+  Sequence and Links to Tools and Databases
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+  Comments and Description Text from UniProtKB
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-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database: HLA-H
CDC HuGE Published Literature: HLA-H

+  Comparative Toxicogenomics Database (CTD)
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+  mRNA Secondary Structure of 3' and 5' UTRs
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+  Protein Domain and Structure Information
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  M27971 - Human MHC class I HLA-ABC mRNA, 3' end.
AK299998 - Homo sapiens cDNA FLJ52667 complete cds, highly similar to HLA class I histocompatibility antigen, alpha chain H precursor.
AK090500 - Homo sapiens cDNA FLJ33181 fis, clone ADRGL2003684, highly similar to HLA class I histocompatibility antigen, alpha chain H precursor.
AX746483 - Sequence 8 from Patent EP1308459.
AK308374 - Homo sapiens cDNA, FLJ98322.
AK309480 - Homo sapiens cDNA, FLJ99521.
AK293556 - Homo sapiens cDNA FLJ53543 complete cds, moderately similar to HLA class I histocompatibility antigen, alpha chain H precursor.
AK309163 - Homo sapiens cDNA, FLJ99204.
AK300878 - Homo sapiens cDNA FLJ53565 complete cds, moderately similar to HLA class I histocompatibility antigen, alpha chain H precursor.

+  Other Names for This Gene
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-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: AK308374.1
exon count: 3CDS single in 3' UTR: no RNA size: 1052
ORF size: 849CDS single in intron: no Alignment % ID: 98.75
txCdsPredict score: 1672.00frame shift in genome: no % Coverage: 99.24
has start codon: yes stop codon in genome: no # of Alignments: 8
has end codon: yes retained intron: yes # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
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-  Methods, Credits, and Use Restrictions
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