Human Gene UBD (uc011gor.2) Description and Page Index
  Description: Homo sapiens ubiquitin D (UBD), mRNA.
Transcript (Including UTRs)
   Position: chr6_mann_hap4:826,391-830,705 Size: 4,315 Total Exon Count: 2 Strand: -
Coding Region
   Position: chr6_mann_hap4:826,659-830,481 Size: 3,823 Coding Exon Count: 2 

Page IndexSequence and LinksUniProtKB CommentsGenetic AssociationsCTDMicroarray
RNA StructureProtein StructureOther SpeciesmRNA DescriptionsOther NamesModel Information
Data last updated: 2013-06-14

+  Sequence and Links to Tools and Databases
  Press "+" in the title bar above to open this section.

+  Comments and Description Text from UniProtKB
  Press "+" in the title bar above to open this section.

-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database: UBD
CDC HuGE Published Literature: UBD
Positive Disease Associations: Behcet Syndrome
Related Studies:
  1. Behcet Syndrome
    Elaine F Remmers et al. Nature genetics 2010, , Nature genetics. [PubMed 20622878]

+  Comparative Toxicogenomics Database (CTD)
  Press "+" in the title bar above to open this section.

-  Microarray Expression Data
Expression ratio colors:

GNF Expression Atlas 2 Data from U133A and GNF1H Chips


GNF Expression Atlas 1 Human Data on Affy U95 Chips


+  mRNA Secondary Structure of 3' and 5' UTRs
  Press "+" in the title bar above to open this section.

+  Protein Domain and Structure Information
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
Jackson LabRGD    
Protein Sequence     

-  Descriptions from all associated GenBank mRNAs
  Y12653 - H.sapiens mRNA for diubiquitin.
BC012472 - Homo sapiens ubiquitin D, mRNA (cDNA clone MGC:21200 IMAGE:4517233), complete cds.
AF123050 - Homo sapiens ubiquitin-like protein FAT10 (FAT10) mRNA, complete cds.
BC051463 - Homo sapiens gamma-aminobutyric acid (GABA) B receptor, 1, mRNA (cDNA clone IMAGE:5299098), **** WARNING: chimeric clone ****.
AK311914 - Homo sapiens cDNA, FLJ92181, highly similar to Homo sapiens ubiquitin D (UBD), mRNA.
CU680336 - Synthetic construct Homo sapiens gateway clone IMAGE:100017948 5' read UBD mRNA.
DQ894624 - Synthetic construct Homo sapiens clone IMAGE:100009084; FLH177018.01L; RZPDo839C02123D ubiquitin D (UBD) gene, encodes complete protein.

+  Other Names for This Gene
  Press "+" in the title bar above to open this section.

-  Gene Model Information
category: coding nonsense-mediated-decay: no RNA accession: NM_006398.3
exon count: 2CDS single in 3' UTR: no RNA size: 1006
ORF size: 498CDS single in intron: no Alignment % ID: 99.70
txCdsPredict score: 1047.00frame shift in genome: no % Coverage: 98.41
has start codon: yes stop codon in genome: no # of Alignments: 7
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.